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1

Genomic Analysis Suggests KITLG is Responsible for a Roan Pattern in two Pakistani Goat Breeds

Talenti, Andrea, Bertolini, Francesca, Williams, Jamie, Moaeen-ud-Din, Muhammad, Frattini, Stefano, Coizet, Beatrice, Pagnacco, Giulio, Reecy, James, Rothschild, Max F, Crepaldi, Paola, Hrbek, Tomas

Journal:

Journal of Heredity

Year:

2018

Language:

english

File:

PDF, 6.49 MB

english, 2018

2

Genome to Phenome: Improving Animal Health, Production, and Well-Being – A New USDA Blueprint for Animal Genome Research 2018–2027

Rexroad, Caird, Vallet, Jeffrey, Matukumalli, Lakshmi Kumar, Reecy, James, Bickhart, Derek, Blackburn, Harvey, Boggess, Mark, Cheng, Hans, Clutter, Archie, Cockett, Noelle, Ernst, Catherine, Fulton, J

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 3.91 MB

english, 2019

3

At the Intersection of Industry, Academia, and Government: How Do We Facilitate Productive Precision Livestock Farming in Practice?

Ramirez, Brett C., Xin, Hongwei, Halbur, Patrick G., Beermann, Donald H., Hansen, Stephanie L., Linhares, Daniel C. L., Peschel, Joshua M., Rademacher, Christopher J., Reecy, James M., Ross, Jason W.,

Journal:

Year:

2019

Language:

english

File:

PDF, 776 KB

english, 2019

4

Embryonic expression of an Nkx2-5/Cre gene using ROSA26 reporter mice

Kelvin A. Moses, Franco DeMayo, Renee M. Braun, James L. Reecy, Robert J. Schwartz

Journal:

Year:

2001

Language:

english

File:

PDF, 1.58 MB

english, 2001

5

Whole genome analysis of infectious bovine keratoconjunctivitis in Angus cattle using Bayesian threshold models

Kadir Kizilkaya, Richard G Tait, Dorian J Garrick, Rohan L Fernando, James M Reecy

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 445 KB

english, 2011

6

Probing genetic control of swine responses to PRRSV infection: current progress of the PRRS host genetics consortium

Joan K Lunney, Juan Pedro Steibel, James M Reecy, Eric Fritz, Max F Rothschild, Maureen Kerrigan, B Trible, Raymond RR Rowland

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 366 KB

english, 2011

7

Association of toll-like receptor four single nucleotide polymorphisms with incidence of infectious bovine keratoconjunctivitis (IBK) in cattle

Ranjit S. Kataria, Richard G. Tait, Dinesh Kumar, Manuel A. Ortega, Jose Rodiguez, James M. Reecy

Journal:

Year:

2011

Language:

english

File:

PDF, 178 KB

english, 2011

8

A QTL resource and comparison tool for pigs: PigQTLDB

Zhi-Liang Hu, Svetlana Dracheva, Wonhee Jang, Donna Maglott, John Bastiaansen, Max F. Rothschild, James M. Reecy

Journal:

Mammalian Genome

Year:

2005

Language:

english

File:

PDF, 195 KB

english, 2005

9

Animal QTLdb: beyond a repository

Zhi-Liang Hu, James M. Reecy

Journal:

Mammalian Genome

Year:

2007

Language:

english

File:

PDF, 219 KB

english, 2007

10

ANEXdb: an integrated animal ANnotation and microarray EXpression database

Oliver Couture, Keith Callenberg, Neeraj Koul, Sushain Pandit, Remy Younes, Zhi-Liang Hu, Jack Dekkers, James Reecy, Vasant Honavar, Christopher Tuggle

Journal:

Mammalian Genome

Year:

2009

Language:

english

File:

PDF, 245 KB

english, 2009

11

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts

Helen Piontkivska, Mary Q Yang, Denis M Larkin, Harris A Lewin, James Reecy, Laura Elnitski

Journal:

Year:

2009

Language:

english

File:

PDF, 1.90 MB

english, 2009

12

Molecular profiles of Quadriceps muscle inmyostatin-null mice reveal PI3K and apoptotic pathways as myostatin targets

Ilham Chelh, Bruno Meunier, Brigitte Picard, Mark James Reecy, Catherine Chevalier, Jean-François Hocquette, Isabelle Cassar-Malek

Journal:

Year:

2009

Language:

english

File:

PDF, 979 KB

english, 2009

13

BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence

James E Koltes, Zhi-Liang Hu, Eric Fritz, James M Reecy

Journal:

BMC Research Notes

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

14

Myostatin genotype regulates muscle-specific miRNA expression in mouse pectoralis muscle

Satyanarayana Rachagani, Ye Cheng, James M Reecy

Journal:

BMC Research Notes

Year:

2010

Language:

english

File:

PDF, 299 KB

english, 2010

15

Chicken Nkx-2.8: A Novel Homeobox Gene Expressed in Early Heart Progenitor Cells and Pharyngeal Pouch-2 and -3 Endoderm

James M. Reecy, Miho Yamada, Kathleen Cummings, Drazen Sosic, Ching-Yi Chen, Gregor Eichele, Eric N. Olson, Robert J. Schwartz

Journal:

Developmental Biology

Year:

1997

Language:

english

File:

PDF, 2.00 MB

english, 1997

16

Murine Tbx2 contains domains that activate and repress gene transcription

Christian Paxton, Honghua Zhao, Yvette Chin, Karen Langner, James Reecy

Journal:

Year:

2002

Language:

english

File:

PDF, 223 KB

english, 2002

17

Structure and regulation of the porcine skeletal α-actin-encoding gene

James M. Reecy, Christopher A. Bidwell, Glenn P. Briley, Alan L. Grant

Journal:

Year:

1996

Language:

english

File:

PDF, 584 KB

english, 1996

18

Transient cardiac expression of the tinman-family homeobox gene, XNkx2-10

Craig S. Newman, James Reecy, Matt W. Grow, Karen Ni, Thomas Boettger, Michael Kessel, Robert J. Schwartz, Paul A. Krieg

Journal:

Mechanisms of Development

Year:

2000

Language:

english

File:

PDF, 749 KB

english, 2000

19

SNPlotz: a generic genome plot tool to aid the SNP association studies

Zhi-Liang Hu, Rex Fernando, Dorian Garrick, James M Reecy

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 336 KB

english, 2010

20

Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach

Bouabid Badaoui, Christopher K Tuggle, Zhiliang Hu, James M Reecy…

Journal:

Year:

2013

Language:

english

File:

PDF, 436 KB

english, 2013

21

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species

Park, Carissa A, Bello, Susan M, Smith, Cynthia L, Hu, Zhi-Liang, Munzenmaier, Diane H, Nigam, Rajni, Smith, Jennifer R, Shimoyama, Mary, Eppig, Janan T, Reecy, James M

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 619 KB

english, 2013

22

In vitro neutralization of HoBi-like viruses by antibodies in serum of cattle immunized with inactivated or modified live vaccines of bovine viral diarrhea viruses 1 and 2

Bauermann, Fernando V., Harmon, Aaron, Flores, Eduardo F., Falkenberg, Shollie M., Reecy, James M., Ridpath, Julia F.

Journal:

Veterinary Microbiology

Year:

2013

Language:

english

File:

PDF, 456 KB

english, 2013

23

Genome-wide association and genomic prediction for host response to porcine reproductive and respiratory syndrome virus infection

Boddicker, Nicholas J, Bjorkquist, Angelica, Rowland, Raymond RR, Lunney, Joan K, Reecy, James M, Dekkers, Jack CM

Journal:

Genetics Selection Evolution

Year:

2014

Language:

english

File:

PDF, 620 KB

english, 2014

24

[ACM Press the 2nd ACM Conference - Chicago, Illinois (2011.08.01-2011.08.03)] Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '11 - Extension of Animal QTLdb

Hu, Zhi-Liang, Wu, Xiao-Lin, Reecy, James M.

Year:

2011

Language:

english

File:

PDF, 681 KB

english, 2011

25

Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors

Koesterke, Lars, Koltes, James E., Weeks, Nathan T., Milfeld, Kent, Vaughn, Matthew W., Reecy, James M., Stanzione, Dan

Journal:

Concurrency and Computation: Practice and Experience

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

26

Comparative analysis of GDF 8 (myostatin) in Bos indicus and Bos taurus

Tantia, Madhu S., Vijh, Ramesh K., Kumar, S.T. Bharani, Mishra, Bina, Reecy, James M.

Journal:

DNA Sequence - The Journal of Sequencing and Mapping

Year:

2006

Language:

english

File:

PDF, 102 KB

english, 2006

27

Polymorphisms in lipogenic genes and milk fatty acid composition in Holstein dairy cattle

Nafikov, Rafael A., Schoonmaker, Jon P., Korn, Kathleen T., Noack, Kristin, Garrick, Dorian J., Koehler, Kenneth J., Minick-Bormann, Jennifer, Reecy, James M., Spurlock, Diane E., Beitz, Donald C.

Journal:

Year:

2014

Language:

english

File:

PDF, 369 KB

english, 2014

28

Interleukin-8, Interleukin-1β, and Interferon-γ Levels Are Linked to PRRS Virus Clearance

Lunney, Joan K., Fritz, Eric R., Reecy, James M., Kuhar, Daniel, Prucnal, Elizabeth, Molina, Ramon, Christopher-Hennings, Jane, Zimmerman, Jeffrey, Rowland, Raymond R.R.

Journal:

Viral Immunology

Year:

2010

Language:

english

File:

PDF, 5.41 MB

english, 2010

29

Identification of genomic regions associated with feed efficiency in Nelore cattle

de Oliveira, Priscila, Cesar, Aline, do Nascimento, Michele L, Chaves, Amália S, Tizioto, Polyana C, Tullio, Rymer R, Lanna, Dante, Rosa, Antonio N, Sonstegard, Tad S, Mourao, Gerson B, Reecy, James M

Journal:

Year:

2014

Language:

english

File:

PDF, 297 KB

english, 2014

30

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples

Choi, Igseo, Bao, Hua, Kommadath, Arun, Hosseini, Afshin, Sun, Xu, Meng, Yan, Stothard, Paul, Plastow, Graham S, Tuggle, Christopher K, Reecy, James M, Fritz-Waters, Eric, Abrams, Samuel M, Lunney, Jo

Journal:

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

31

Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle

Tizioto, Polyana C, Taylor, Jeremy F, Decker, Jared E, Gromboni, Caio F, Mudadu, Mauricio A, Schnabel, Robert D, Coutinho, Luiz L, Mourão, Gerson B, Oliveira, Priscila, Souza, Marcela M, Reecy, James

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 714 KB

english, 2015

32

Associations between infectious bovine keratoconjunctivitis at weaning and ultrasongraphically measured body composition traits in yearling cattle

Funk, Lucas D., Reecy, James M., Wang, Chong, Tait, Richard G., O'Connor, Annette M.

Journal:

Journal of the American Veterinary Medical Association

Year:

2014

Language:

english

File:

PDF, 514 KB

english, 2014

33

Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2

Koltes, James E, Kumar, Dinesh, Kataria, Ranjit S, Cooper, Vickie, Reecy, James M

Journal:

BMC Research Notes

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

34

Development and Application of Bovine and Porcine Oligonucleotide Arrays with Protein-Based Annotation

Garbe, John R., Elsik, Christine G., Antoniou, Eric, Reecy, James M., Clark, Karl J., Venkatraman, Anand, Kim, Jae-Woo, Schnabel, Robert D., Michael Dickens, C., Wolfinger, Russell D., Fahrenkrug, Sco

Journal:

Journal of Biomedicine and Biotechnology

Year:

2010

Language:

english

File:

PDF, 3.47 MB

english, 2010

35

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection

Schroyen, Martine, Steibel, Juan P., Koltes, James E., Choi, Igseo, Raney, Nancy E., Eisley, Christopher, Fritz-Waters, Eric, Reecy, James M., Dekkers, Jack C. M., Rowland, Robert R. R., Lunney, Joan

Journal:

Year:

2015

Language:

english

File:

PDF, 3.00 MB

english, 2015

36

Developmental progress and current status of the Animal QTLdb

Hu, Zhi-Liang, Park, Carissa A., Reecy, James M.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.26 MB

english, 2016

37

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

File:

PDF, 425 KB

2015

38

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

Language:

english

File:

PDF, 425 KB

english, 2015

39

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Schroyen, Martine, Eisley, Christopher, Koltes, James E., Fritz-Waters, Eric, Choi, Igseo, Plastow, Graham S., Guan, Leluo, Stothard, Paul, Bao, Hua, Kommadath, Arun, Reecy, James M., Lunney, Joan K.,

Journal:

Year:

2016

Language:

english

File:

PDF, 2.65 MB

english, 2016

40

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

Tuggle, Christopher K., Giuffra, Elisabetta, White, Stephen N., Clarke, Laura, Zhou, Huaijun, Ross, Pablo J., Acloque, Hervé, Reecy, James M., Archibald, Alan, Bellone, Rebecca R., Boichard, Michèle,

Journal:

Animal Genetics

Year:

2016

Language:

english

File:

PDF, 361 KB

english, 2016

41

Large-scale gene co-expression network as a source of functional annotation for cattle genes

Beiki, Hamid, Nejati-Javaremi, Ardeshir, Pakdel, Abbas, Masoudi-Nejad, Ali, Hu, Zhi-Liang, Reecy, James M

Journal:

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

42

Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure

Fleming, Damarius S., Weigend, Steffen, Simianer, Henner, Weigend, Annett, Rothschild, Max, Schmidt, Carl, Ashwell, Christopher, Persia, Mike, Reecy, James, Lamont, Susan J.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 12.35 MB

english, 2017

43

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection

Kommadath, Arun, Bao, Hua, Choi, Igseo, Reecy, James M., Koltes, James E., Fritz-Waters, Elyn, Eisley, Chris J., Grant, Jason R., Rowland, Robert R. R., Tuggle, Christopher K., Dekkers, Jack C. M., Lu

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

44

Cattle infection response network and its functional modules

Beiki, Hamid, Pakdel, Abbas, Javaremi, Ardeshir Nejati, Masoudi-Nejad, Ali, Reecy, James M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.99 MB

english, 2018

45

Putative Regulatory Factors Associated with Intramuscular Fat Content

Cesar, Aline S. M., Regitano, Luciana C. A., Koltes, James E., Fritz-Waters, Eric R., Lanna, Dante P. D., Gasparin, Gustavo, Mourão, Gerson B., Oliveira, Priscila S. N., Reecy, James M., Coutinho, Lui

Journal:

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

46

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis)

Iamartino, Daniela, Nicolazzi, Ezequiel L., Van Tassell, Curtis P., Reecy, James M., Fritz-Waters, Eric R., Koltes, James E., Biffani, Stefano, Sonstegard, Tad S., Schroeder, Steven G., Ajmone-Marsan,

Journal:

Year:

2017

Language:

english

File:

PDF, 3.41 MB

english, 2017

47

A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

Moreira, Gabriel Costa Monteiro, Boschiero, Clarissa, Cesar, Aline Silva Mello, Reecy, James M., Godoy, Thaís Fernanda, Trevisoli, Priscila Anchieta, Cantão, Maurício E., Ledur, Mônica Corrêa, Ibelli,

Journal:

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

48

Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Zhang, Hui, Yu, Jia-Qiang, Yang, Li-Li, Kramer, Luke M., Zhang, Xin-Yang, Na, Wei, Reecy, James M., Li, Hui

Journal:

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

49

Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Casual Genes and Mutations on Pig Chromosome 17

Hu, Zhi-Liang, Ramos, Antonio M., Humphray, Sean J., Rogers, Jane, Reecy, James M., Rothschild, Max F.

Journal:

Frontiers in Genetics

Year:

2011

Language:

english

File:

PDF, 915 KB

english, 2011

50

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle

Buchanan, Justin W., Reecy, James M., Garrick, Dorian J., Duan, Qing, Beitz, Don C., Koltes, James E., Saatchi, Mahdi, Koesterke, Lars, Mateescu, Raluca G.

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 759 KB

english, 2016